ND gene polymorphism/mutation | Restriction enzymes | Size of PCR product/ND gene | Size after cutting | PCR-RFLP results (n=162) | |||
Genotype | Type 1 ROP (n=26) | Type 2 ROP (n=57) | Control (n=79) | ||||
C597A | HaeIII | CC: 12, 68, 104, 113 bp | CC | 26 | 57 | 79 | |
CA: 12, 68, 104, 113, 172 bp | CA | 0 | 0 | 0 | |||
297 bp | AA: 12, 113, 172 bp | AA | 0 | 0 | 0 | ||
L108P | HaeIII | LL: 12, 68, 104, 113 bp | LL | 26 | 57 | 79 | |
LP: 12, 30, 63, 83, 104, 113 bp | LP | 0 | 0 | 0 | |||
PP: 12, 30, 68, 83, 104 bp | PP | 0 | 0 | 0 | |||
R121W | MspI | RR: 58, 72, 169 bp | RR | 26 | 57 | 79 | |
RW: 58, 72, 130, 169 bp | RW | 0 | 0 | 0 | |||
WW: 130, 169 bp | WW | 0 | 0 | 0 | |||
A105T | MboII | AA: 297 bp | AA | 26 | 57 | 79 | |
AT: 103, 194, 297 bp | AT | 0 | 0 | 0 | |||
TT: 103, 194 bp | LL | 0 | 0 | 0 | |||
V60E | Not all optimisations for primers on PCR-SSP can be performed. | ||||||
C110G |
ND, Norrie disease; PCR-RFLP, PCR-restriction fragment length polymorphism; PCR-SSP, PCR-single specific primer; ROP, retinopathy of prematurity; bp, base pair.